Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVNDDGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS
4FFJ Chain:A ((6-199))
----------------IQEALEALQKGRLVLVIDDKD--NEGDLICSAQAATTENVNFMATYAKGLICMPMSESLANQLMLSPMVE----------TAFTVSIDYKE-TTTGISAEERGLTARMCVAEDITPSDFRRPGHMFPLIAKKGGVLERNGHTEATVDLLKLAGLKECGLCCEIMNHDGKMMRTDDLIQFSKKHNIPLITIKELQEYRKVYD
General information:
TITO was launched using:
RESULT:
Template:
4FFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142384 for 1587 contacts (-89.7/contact) +
2D Compatibility (PS) -20318 + (NN) -6352 + (LL) 1464
1D Compatibility (HY) -13600 + (ID) 3950
Total energy: -185140.0 ( -116.66 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_4FFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FFJ-query.scw
PDB file :
Tito_Scwrl_4FFJ.pdb
: