Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARRNKARKRKISPDSRYDSVLLMRFINVIMKYGKKSVAEKIVYNALSSAEKEVNERGVSIFETAVENVTPSVEVRSRRIGGATYQVPVEVKKDRAVSLALRWIVKSASAMRKKSGKGFFKCLCSEILDAYNKRGGAFKMCEEKYKMAEANKAFSHLRF
1XMO Chain:G ((2-156))
-ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
General information:
TITO was launched using:
RESULT:
Template:
1XMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79895 for 1117 contacts (-71.5/contact) +
2D Compatibility (PS) -16638 + (NN) -6834 + (LL) 660
1D Compatibility (HY) -10400 + (ID) 3450
Total energy: -116557.0 ( -104.35 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1XMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XMO-query.scw
PDB file :
Tito_Scwrl_1XMO.pdb
: