Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MIGSIFIFLGICLVTISTIGVIRFTDFYTRLHAAGITDSSGAMLLLIGLALQNEFSVNTVKIVLLIFIIWVANSTNSYILARTHYKSKEKAIKES-
2KSW Chain:A ((1-66))
VPVGSD------CEPKLCTMDLVP-HCFLNP--EKGIVVVHG-GCALSKYKCQNP---------------------NHEKLGYTHECEEAIKNAPRP
General information:
TITO was launched using:
RESULT:
Template:
2KSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24042 for 421 contacts (-57.1/contact) +
2D Compatibility (PS) -6514 + (NN) 696 + (LL) 3624
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -28186.0 ( -66.95 by residue)
QMean score : 0.049
(partial model without unconserved sides chains):
PDB file :
Tito_2KSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KSW-query.scw
PDB file :
Tito_Scwrl_2KSW.pdb
: