Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDHSTSYGLITNIRPSPSWLSKLSFWRKKTLLISQFRTSVALYVNENNHILNAIKGSSLSKILDRVNIRDKDGLSALHLTVKGGNVNIVKLLLDGGAEPNIRSWMNLTTPLHNAVLNNRVYIVKLLFDSHANSNILSRSDISPLYFAVVNN
4J8Y Chain:A ((40-121))
------------------------------------------------------------------VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASSLTGI-TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYG
General information:
TITO was launched using:
RESULT:
Template:
4J8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37800 for 645 contacts (-58.6/contact) +
2D Compatibility (PS) -8807 + (NN) -5548 + (LL) 4432
1D Compatibility (HY) -4400 + (ID) 1500
Total energy: -53623.0 ( -83.14 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_4J8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J8Y-query.scw
PDB file :
Tito_Scwrl_4J8Y.pdb
: