Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEIDYHKITIVMTNGQEFETRSTYGKEGDKIKLDRDPLTHPAWTGSLTSGSTNKTSKIAKFNDKYGNIF
1NKW Chain:Y ((4-66))
DLHPKAVPCKIIYQGQVVMETMSTR----PEIHVDVWSGVHPFWTGE--ERFLDTEGRVDKFNKRFGDSY
General information:
TITO was launched using:
RESULT:
Template:
1NKW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 215438 for 1653 contacts (130.3/contact) +
2D Compatibility (PS) -5883 + (NN) -567 + (LL) 52
1D Compatibility (HY) 2000 + (ID) 100
Total energy: 210940.0 ( 127.61 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1NKW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NKW-query.scw
PDB file :
Tito_Scwrl_1NKW.pdb
: