Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLAKGKEMGKLEGKIALIAGASGGMGSAVAKRFVREGAYVILISRSIDNLKQLYDEIEKLDEFKEGSVKLIQLDLLDFENVKILANMIESLKLSESGALDILVACTGILGKLNLVHDCE---LEELQNVMNTNFTANWYLLKNLDPVLKKSNSGRVIFMTSEVTLSPSSYPYWVPYAASKAALEIMVKIYASETKHTKLCVNAVYSEGPVDSEMYKQAFPGKDISELIL----------PNKLTDKFVELASEDCS-ISGQVLPLSKSLE
1VL8 Chain:A ((17-258))
---------FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR---NLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVK---KLLEAVK-EKFGKLDTVVNAAGI----NRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS-LTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVN-VIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWT
General information:
TITO was launched using:
RESULT:
Template:
1VL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163873 for 2005 contacts (-81.7/contact) +
2D Compatibility (PS) -24939 + (NN) -12030 + (LL) 2012
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -216230.0 ( -107.85 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1VL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL8-query.scw
PDB file :
Tito_Scwrl_1VL8.pdb
: