Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSQSPKRMYGTGNNFVIIDSRSINNLNWNYREIA---NQN---GCDQII-VITNSSAADCFMHIYNADGGEVEMCGNAARCVGYLIMSEKSTEYA---TIELVNKRILECFKVGGRSIKVNMGKPLFKWHEIPLSAKCDPLHLPIELEMLKDPVA-----VNIGNPHMVFFVDN------ISEIPLQSLGPKLEKHTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTSVNLPGGKLLIEWP---DNIFMTGDIGFL |
| 3EKM Chain:D ((31-299)) | -------KYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQ-VKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGR-ADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179627 for 2100 contacts (-85.5/contact) +
2D Compatibility (PS) -26963 + (NN) -9394 + (LL) 316
1D Compatibility (HY) -14000 + (ID) 4400
Total energy: -234068.0 ( -111.46 by residue)
QMean score : 0.415
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