Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKMEACYSFDDILLLPAYSNILPCNADTKTYLTNSIELNIPLISSAMDTVTESDFAITIAQHGGIGCIHKNLSVDEQVSEVRRVKKYENWIVYNPITISPDKTVAEAISLMKKHDYSGIPVVDQRKLVGVLTNRDIRFIEDQNMSIKVSEVMTKEKLVTIREQEVDSASAMKLLHENRIEKLLVIDENFCCIGLITVKDIEKYNRYPNSCKDSKGRLRVAAAVGTGKKDGIERCEALIGEEIDVIIVDTAHGHSENVIDTIKEIKTMYPNTQLVGGNIATKEAAEALIDAGVDAVKVGIGPGSICTTRVVTGVGVPQFSAIQSVAETCKARKVRLIADGGIKYSGDIAKAIAAGADSVMIGSIFAGTDESPGEIIMYKGRAYKGYRGMGSISAMKQGSASRYFQDKDSKLKLVPQGVEGRVPFKGPASGVIHQLIGGLQAAMGYTGNRNIEEMKKNCRFVIITASGLRESHAHDIIITQEAPNYAYQVFNLLTDSDA |
4MY8 Chain:A ((102-367)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IEQQAEQVDKVKRSGGLL-VGAAVGV-TADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSK------------LVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSGAGLLE---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MY8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122273 for 1981 contacts (-61.7/contact) +
2D Compatibility (PS) -28157 + (NN) -8378 + (LL) 18136
1D Compatibility (HY) -24000 + (ID) 6900
Total energy: -171572.0 ( -86.61 by residue)
QMean score : 0.496
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