Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNTDQQQGLDSKEKSSEDLKPEKKREMKEAAAELKEGIKKSGAGNQSVGTEVSNQATTQDIDNSKTMEH
3VPG Chain:A ((284-308))
-----------------PSLSPEEREALRRSAEILKEAAFALGF--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VPG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5581 for 96 contacts (58.1/contact) +
2D Compatibility (PS) -2899 + (NN) -3313 + (LL) 1468
1D Compatibility (HY) -800 + (ID) 350
Total energy: -313.0 ( -3.26 by residue)
QMean score : 0.826
(partial model without unconserved sides chains):
PDB file :
Tito_3VPG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VPG-query.scw
PDB file :
Tito_Scwrl_3VPG.pdb
: