Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVENEGVLLVLSSPSGAGKTTILERLL-ERSTNLVRSVSMTTRKPRPGEINGKDYFFVTKKEFHELCEAGQMLEYARVFENFYGIPKSFIEQNLSSGISVLLSIDWQGAFHLFELMREKVISVFILPPSMEELRLRLQKRNSDSASEIEHRLAEAQKEM--SKRDKYDYVVINDDIDKSVEEISSILDKERLKRSGV
1GKY Chain:A ((4-186))
---------IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIFAEK------
General information:
TITO was launched using:
RESULT:
Template:
1GKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80501 for 1310 contacts (-61.5/contact) +
2D Compatibility (PS) -20633 + (NN) -14741 + (LL) 1200
1D Compatibility (HY) -12000 + (ID) 3400
Total energy: -130075.0 ( -99.29 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_1GKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GKY-query.scw
PDB file :
Tito_Scwrl_1GKY.pdb
: