Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMNIPNIENCDLHGKAVLLRVDFNIPIKNGKVHDATRVLRSLPTIRHLVNAGAK-VIIISHFGRPRAKDNN-LSLKNVVKTLSQLLNKEVKFVDDCIGKKVQKVVNAIAIRDVILLENLRFYKEEE--------------QNDANFAKQLASLADVYVNDAFSCSHRAHASISRITEFLPSYA-GFCLQDELRYLEKAVSFEAKPITAIVGGAKISTKIKMLIRLAEKVDYLVLGGAIANNF-LLFNKVNIGKSFFQNGVDSLLHDVVKIADKNNCKIVIPEDVLI--AVNSDYSTCILRKTESVLDNDVILDIGPQTLSTISSIVASSKALLWNGPIGVFEHSAFANGTIEVMKVVSDSTHKGKLTSVIGGGDSLSAINAAGLTDKDFTYVSTGGGAFLSWLSGDKMPGIAALQSMLN |
1QPG Chain:A ((7-411)) | -----SVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKKYGVTDK-ISHVSTGGGASLELLEGKELPGVAFLSEKK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QPG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -315196 for 3355 contacts (-93.9/contact) +
2D Compatibility (PS) -40910 + (NN) -12361 + (LL) 856
1D Compatibility (HY) -32800 + (ID) 7700
Total energy: -408111.0 ( -121.64 by residue)
QMean score : 0.571
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