Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRTFQPKNLIRKRRHGFRSRMATRAGRKILNRRRSLGCKKLCA
1IIJ Chain:A ((1-35))
-EQRASPVTFIIATVVGVLLFLILVVVVGILIKRRR--------
General information:
TITO was launched using:
RESULT:
Template:
1IIJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4717 for 140 contacts (33.7/contact) +
2D Compatibility (PS) -3596 + (NN) 762 + (LL) 772
1D Compatibility (HY) -2000 + (ID) 350
Total energy: 305.0 ( 2.18 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_1IIJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IIJ-query.scw
PDB file :
Tito_Scwrl_1IIJ.pdb
: