Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MQNSGQQKFAELEGNRKVLSKRVLRKVEITTVSKGQNNSAASEKNFLRQRANLSKLKKELSKLLVLMIRLKLYRIDKMICERNLINLSNIVNYLCL
3VIQ Chain:B ((1-85))
MEKSQLESRVHLLEQQKEQLESSLQDALA----KLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKCTSVELFDRFGVNGSE--------
General information:
TITO was launched using:
RESULT:
Template:
3VIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5974 for 377 contacts (15.8/contact) +
2D Compatibility (PS) -9164 + (NN) -7404 + (LL) 1236
1D Compatibility (HY) -400 + (ID) 150
Total energy: -9908.0 ( -26.28 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3VIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VIQ-query.scw
PDB file :
Tito_Scwrl_3VIQ.pdb
: