Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNHKNVKKMIKAIAKRTLINKMRKSKTRTAIRKLVDIIKSGNKENVTPAFRSAESNLHKCVSKGVIHKNTAARKISRLNAKVKALMTA
2VQF Chain:T ((21-94))
---------------KRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEA
General information:
TITO was launched using:
RESULT:
Template:
2VQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8833 for 506 contacts (-17.5/contact) +
2D Compatibility (PS) -7976 + (NN) -3916 + (LL) 1636
1D Compatibility (HY) 0 + (ID) 1500
Total energy: -20589.0 ( -40.69 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_2VQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQF-query.scw
PDB file :
Tito_Scwrl_2VQF.pdb
: