Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKKALLELSNGLKIELPVLSGTMGYDVLNIKDLYKVTGLLTYDPGFVSTASCSSAITFIDGDEGVLRYRGHDIADLAQSNDFTAVIYLLLYGKLPNLEQHKKFFLKIQELSKVPEQVVNVIKAFPKTAHPMSILIACFATLSALYHERYGNNVSNENLDFGISAIAQV-PAIIAMVYRHTNDQEFIDTDNELNYSKSFLRMMFGNALDNDKSTLFAKALDKIFTLHADHEQNASTAAVRVVGSAGSNLFACLSAGVATLWGPVHGGANESVINMLKEIEQSGNVDKFIEKAKDDKDPFKLMGFGHRVYKNYDPRARILKDACDEILNKLEQDSKLLKIAKELEKIALKDEYFVVRKLYPNVDFYSGIIMNAINIPPSMFTPIFALARTTGWVTQWYEMINDKETKICRPRQLYVGK |
2P2W Chain:A ((5-351)) | ---------------------------------------------GLEGVKICESSICYLDGINGRLYYRGIPVEELAEKSTFEETAYFLWYGKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYIDVLKIFLSIH--------------EDLREKAIRVASVFPTILAYYYRYSKGKELIRPRKDLSHVENFYYMMFGER--NEKIRL----LESAFILLMEQDINASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSEDRVEEFVQKCLKEKR--KIMGFGHRVYKTYDPRAVFLK----RVLQEHFPDSKLFRIASKLEEYIVSNK---IKNIYPNVDLYSSVLFEELGFPRNMFTALFATARVVGWTAHVIEYVSD--NKLIRPTSEYVGP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2P2W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219157 for 2832 contacts (-77.4/contact) +
2D Compatibility (PS) -36318 + (NN) -14770 + (LL) 4456
1D Compatibility (HY) -33600 + (ID) 6450
Total energy: -305839.0 ( -107.99 by residue)
QMean score : 0.540
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