Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITHMNMLILILLCGIVTLLIRIIPFIMISKVQLPDVVVRWLSFIPITLFTALVIDSIIQQTPHGEGYTLNIPYIIALIPTVILSIITRSLTITIISGIVIMATLRFFF
2GSM Chain:B ((72-97))
----------------------------------NSPLEIAWTIVPIVILVAIGAFSLPV-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6620 for 97 contacts (-68.2/contact) +
2D Compatibility (PS) -2540 + (NN) 2 + (LL) 9004
1D Compatibility (HY) -1200 + (ID) 200
Total energy: -1554.0 ( -16.02 by residue)
QMean score : -0.121
(partial model without unconserved sides chains):
PDB file :
Tito_2GSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GSM-query.scw
PDB file :
Tito_Scwrl_2GSM.pdb
: