Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------MYKLLISIKEVKIIAIVKNMGVAYVFSKIQPKATIIATITLVFVALALYLVPGLGLIFALFATI-PGIVLWNKSIQSFGVSALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSKERMLYVTTV-AMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQILEEGFRQATVQLPGFIIII--------------TFLIVLIN------LIVTFPVLRKFKIATPVFKPLFAWQMS----GILLWIYIIVIICLLFTGQP-SVFQSILLNFQLVLSLVMYIQ----GLSVIHFFGKAKGLP------NAVTILLLIIGTILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK |
| 4OYF Chain:A ((9-416)) | EYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4OYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -387622 for 2660 contacts (-145.7/contact) +
2D Compatibility (PS) -33114 + (NN) -13829 + (LL) 4
1D Compatibility (HY) -14400 + (ID) 2800
Total energy: -451761.0 ( -169.83 by residue)
QMean score : 0.177
|
|
|