Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQLQTMSNSIFIKNLIFAINESLEYSETNSVMEVTFQKAIGFTQYNFEGEKLKLKDDLKELISLVGREEAVLIFVNRLNEGLYCILNQLIEWDNLNYQFAMYKEAMHNYLFNTIEKLNDDTLFLLHQDGLITLPEHKYKTVAVKSTFGSRDFTFRFKFPEESDTVNTHQMLNKAISITGSLANTHLEQPQKYKAHFKKIPIETKNLTS |
4RGM Chain:S ((82-151)) | ----------------------------------------------------------------------------------------------------------------------------------------KYKDKYV-DVFGA-NYYYQCYFSK------------RKTCMYGGVTEHNGNQLDKYRSITVRVFEDGKNLLS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1010 for 211 contacts (-4.8/contact) +
2D Compatibility (PS) -6035 + (NN) -919 + (LL) 12300
1D Compatibility (HY) -2800 + (ID) 750
Total energy: 786.0 ( 3.73 by residue)
QMean score : 0.210
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