Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLATVGSLIVTSTLVFSSMPFQNAHADTTSMNVPNKQSQNVQNHRPYGGVVPQGMTQAQYTELEKTLPQLSAGSNMQDYNMKLYDATQNIADKYNVIITTNVGVFKPHAVRDMNGHALPLTKDGNFYQTNVDANGVNHGGSEMVQNKTGHMSQQDHMNQNTHMNQQPQIQQGHMQSSNHQMMSPKANMHSSNHQMNQSNKKVLPAAGESMTSSILTASIAALLLVSGLFLAFRRRSTNK |
| 1WAZ Chain:A ((55-68)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IGLTIYAIQRKRQA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WAZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2761 for 47 contacts (-58.7/contact) +
2D Compatibility (PS) -1455 + (NN) -1027 + (LL) 12156
1D Compatibility (HY) -400 + (ID) 50
Total energy: 6463.0 ( 137.51 by residue)
QMean score : -0.094
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