Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMCKPTQNYIFNEQNN--NGLSSLIIGRTTMSEAITSTEIENLDLLTAGPVPPNPSELIGSERFKELVDLF--NKRYDIIIVDTPPVNTVTDAQLYARAIKDSLLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
4V02 Chain:A ((5-177))
-------------------------------------------IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDAAIGLRNLDMILGLENRIVYDILDVLEGRVPYEKAL----VKDKRGLSLWLLPA---DVIDIEKWNKTVEEIKNSGNYDYILVDS-PAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIK--------------
General information:
TITO was launched using:
RESULT:
Template:
4V02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55318 for 1316 contacts (-42.0/contact) +
2D Compatibility (PS) -17688 + (NN) -9768 + (LL) 2936
1D Compatibility (HY) -10800 + (ID) 2000
Total energy: -92638.0 ( -70.39 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_4V02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V02-query.scw
PDB file :
Tito_Scwrl_4V02.pdb
: