Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVVNLIMTKERRTFSSEFKLQMVRLY-KN-GKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNH--QDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
2JN6 Chain:A ((2-88))
-----------PTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRARTRHPAES----
General information:
TITO was launched using:
RESULT:
Template:
2JN6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6435 for 450 contacts (14.3/contact) +
2D Compatibility (PS) -8768 + (NN) -3500 + (LL) 1964
1D Compatibility (HY) 0 + (ID) 800
Total energy: -4669.0 ( -10.38 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_2JN6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JN6-query.scw
PDB file :
Tito_Scwrl_2JN6.pdb
: