Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIYFSFTGNVRRFIKRT-----ELENTLEITAENCMEPVHE---------PFIIVTGT-------IGFGEV---PEPVQSFLEV--NHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
4N82 Chain:B ((24-159))
VSLVYISLSGNTESFVRRLTDYLLEQHPSLEVEKIHIKDLVKERQPFFEMDNPFIAFLPTYLEGGNGVDNGDVEILTTDVGDFIAYGQNASKCLGVIGSGNRNFNNQYCLTAKQYSERFGFPVLADFEMRGMLGDI----------------------
General information:
TITO was launched using:
RESULT:
Template:
4N82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56972 for 786 contacts (-72.5/contact) +
2D Compatibility (PS) -11422 + (NN) 440 + (LL) 1020
1D Compatibility (HY) -10000 + (ID) 1750
Total energy: -78684.0 ( -100.11 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_4N82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N82-query.scw
PDB file :
Tito_Scwrl_4N82.pdb
: