Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTERILEVNDLHVSFDITAGEVQAVRGVDFYLNKGETLAIVGESGSGKSVTTKAITKLFQGDTGRIKKGEILFLGEDLAKKPENELIKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLIKHKNYSKAQAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKVLIADEPTTALDVTMQAQILDLMKELQQKIDTAIIFITHDLGVVANIADRVAVMYGGQMVETGDVNEIFYDPKHPYTWGLLSSMPDLSTTNDTPLLAIPGAPPDLLHPPKGDAFARRSQYALDIDFKVEPPWFKVSPTHFVKSWLLDARAPKVELPELVKQRMKPMPNNYEKPLKVERVSFNEK |
| 4YMW Chain:J ((4-239)) | -------VNDVYKNF----GSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCIN-LLEEPT----KGEVFIDGVKINNGKVN-INKVRQK-VGMVFQH--FNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQ---YPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVV-VTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLSKI---------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146676 for 1918 contacts (-76.5/contact) +
2D Compatibility (PS) -25726 + (NN) -13132 + (LL) 7232
1D Compatibility (HY) -20000 + (ID) 4550
Total energy: -202852.0 ( -105.76 by residue)
QMean score : 0.446
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