Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
3OPQ Chain:A ((3-148))
VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDINIAKALAEFRA--------------
General information:
TITO was launched using:
RESULT:
Template:
3OPQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123144 for 1266 contacts (-97.3/contact) +
2D Compatibility (PS) -15753 + (NN) -5028 + (LL) 1404
1D Compatibility (HY) -15600 + (ID) 4300
Total energy: -162421.0 ( -128.29 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_3OPQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OPQ-query.scw
PDB file :
Tito_Scwrl_3OPQ.pdb
: