Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEIVIASNNQGKINDFKVIFPD-YHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
2J4E Chain:A ((10-191))
-KKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKI---DLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKP-----EGLHQLLAGFEDKSAYALCTFALST---PVRLFRGRTSGRIVAPR-GCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYF------
General information:
TITO was launched using:
RESULT:
Template:
2J4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35538 for 1389 contacts (-25.6/contact) +
2D Compatibility (PS) -19371 + (NN) -10722 + (LL) 716
1D Compatibility (HY) -11200 + (ID) 2600
Total energy: -78715.0 ( -56.67 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2J4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J4E-query.scw
PDB file :
Tito_Scwrl_2J4E.pdb
: