Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDK-AKYITGQTIHVNGGMYM
4DML Chain:A ((9-248))
----RIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDM--------AEKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM
General information:
TITO was launched using:
RESULT:
Template:
4DML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115506 for 2074 contacts (-55.7/contact) +
2D Compatibility (PS) -24733 + (NN) -372 + (LL) 1004
1D Compatibility (HY) -26800 + (ID) 7100
Total energy: -173507.0 ( -83.66 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_4DML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DML-query.scw
PDB file :
Tito_Scwrl_4DML.pdb
: