Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSD--------------NAVLTIFQHPLTSFN--PDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKL---------PSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNHFIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQTFSY
4YMT Chain:J ((16-236))
----------------VLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQH----FNLFPHLTAIENITLAPVKVKKMNKKEAE-----------ELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMK-QLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFL-----
General information:
TITO was launched using:
RESULT:
Template:
4YMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143427 for 1525 contacts (-94.1/contact) +
2D Compatibility (PS) -21197 + (NN) -9334 + (LL) 3112
1D Compatibility (HY) -14800 + (ID) 3450
Total energy: -189096.0 ( -124.00 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_4YMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMT-query.scw
PDB file :
Tito_Scwrl_4YMT.pdb
: