Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKY----LKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
3W90 Chain:A ((3-207))
--GI-VTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGV-----EGLLALLEGLGVRLLAQAE-GNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVPPP--FVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARE-------QAYEEVLRDLLRRDERDKAQSA----PAPDALVLDTGGMTLDEVVAWVLAHIR---
General information:
TITO was launched using:
RESULT:
Template:
3W90.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104003 for 1532 contacts (-67.9/contact) +
2D Compatibility (PS) -21047 + (NN) -7268 + (LL) 1372
1D Compatibility (HY) -11600 + (ID) 3700
Total energy: -146246.0 ( -95.46 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_3W90.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W90-query.scw
PDB file :
Tito_Scwrl_3W90.pdb
: