Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
3UPS Chain:A ((15-121))
-DPE-LLKLVTDSLDDDQALEIATIPLAGKSSIADY-VIASGRSSRQVTA-AQKLADRIKAATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWGFGD---------
General information:
TITO was launched using:
RESULT:
Template:
3UPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14498 for 735 contacts (19.7/contact) +
2D Compatibility (PS) -10905 + (NN) -3675 + (LL) 1368
1D Compatibility (HY) 1200 + (ID) 450
Total energy: 2036.0 ( 2.77 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_3UPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UPS-query.scw
PDB file :
Tito_Scwrl_3UPS.pdb
: