Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTHYHFVGIKGSGMSSLAQIMHDLGHEVQGSDIENYVFTEVALRNKGIKILPFDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPESDYFAFEACEYRR-----------HFLS--YKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDEHLRKIEADVPIYYYGFKDSDDIYAQNIQITDKGTAFD-VYVDGEFYDHFLS-PQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIAN--QVIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRVFLCEIFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLFMGAGDIQKLQNAYLDKLGMKNAF |
| 2AM1 Chain:A ((104-338)) | --------------------------------------------------------------------------------------------------------AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYLPIDKKVVRFG-------QGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILET--------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AM1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75555 for 1580 contacts (-47.8/contact) +
2D Compatibility (PS) -22414 + (NN) -3401 + (LL) 16120
1D Compatibility (HY) -4400 + (ID) 2800
Total energy: -92450.0 ( -58.51 by residue)
QMean score : 0.385
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