Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MKKFFFIGLLVF------------VVFFTA-ATIIWFSYDKNKYGTKQYDKTFKDDAFDNVSINLDSTELRI---KRGNQ-FRVKYDGDNDILINIVDKTL----K-IS-DKRSKTRGYAI-DMNPFH--ENKKTLTIEM-PD-K-MIKRLNLSSGA--------GSVRISDVDLENTSIQSINGEVVIKNSNLDALDSKTNNSSTYI-SKSNIKNSNIKVVIGTLQIDKSQI---KQSIFLNDHGDIEF-KNM---PSKVDAKASTKQGDIRFKYDSKPE-DTILKLNPGTGDSVVKN--KTFTNGKVGKSDNVLEFYTIDGNIKVE------------ |
| 4YD8 Chain:A ((7-373)) | LFKARDWWSTILGDKEEFDQGCLCLANVDNSGNGQDKIIVGSFMGYLRIFSPHPAKTG----DGAQAEDLLLEVDLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNQCQMKLMYEHNLQRTACNMTYGSFGGVKGRDLICIQSMDGMLMVFEQESYAFGRFLPGFLLPGPLAYSS---RTDSFLTVSSCQQVESYKYQVLAFATDADKLVVDWTLNIGEQALDICIVSFSASSVFVLGERNFFCLKDNGQIRFMKKLDWSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQDVTLKWATQLPHIPVAVRVGCLHDLKGVIVTLSDDGHLQCSYLGTDPSLFQAP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YD8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 102212 for 1847 contacts (55.3/contact) +
2D Compatibility (PS) -29435 + (NN) -7207 + (LL) 620
1D Compatibility (HY) 8000 + (ID) 900
Total energy: 73290.0 ( 39.68 by residue)
QMean score : 0.035
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