Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMKKIMTIFGTRPEAIKMAPLVKALEQEKMLEPIVVVTAQHREMLDSVLSTFEIKPKYDLNIMKSGQTLSEITSKSITQLEQVIQLEKPDMVLVHGDTMTTFAGGLAAFYNQVPIGHVEAGLRSYDKYSPFPEEVNRQLVGVLADLHFAPTKNAASHLLSEGKYSESVVVTGNTAIDAMKYTVDDN----YKS-NI-----MDKYHDKKFILMTAHRR--ENIGKPMENIFKAVRRLIDEYTDLALVYPMHKNPKVREVAQK-ILGSHDRIELIEPLDVVDFHNFAKKSYFILTDSGGIQEEAPSFNKPVLV-LRSVTERPEGVEAGTLKVIGTNKQNVYQAAKELIDDERLYHQMSEASNPYGDGFASERIVNHIKYYLNLITEKPSDF |
| 1VGV Chain:A ((1-375)) | --MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPF--IDPDKKMILVTGHRRES-FGRGFEEICHALADIATTHQDIQIV-YPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRD-TTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRA----HNPYGDGQACSRILEALKNNRIS---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174152 for 3047 contacts (-57.2/contact) +
2D Compatibility (PS) -38569 + (NN) -10549 + (LL) 120
1D Compatibility (HY) -31200 + (ID) 7950
Total energy: -262300.0 ( -86.08 by residue)
QMean score : 0.513
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