Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQNKQILFNKIP--EGMPQEDTFKIEEIDTPKLESDG-VLVQTLYISVDPYMRGRMTK--ADSYVQPFEIGKPIVSHVVAKVIDSTLADYKKGDVVVGM-LPWRIINHVQADQITKV--PTTDVPLDLYLSVLGMPGQTAYHGLLDIGQPKAGD--TVVVSAASGAVGSVVGQIAKIKGC-RVVGIAGGDKKVNYLTETLGFDAGIDYKKEDFAEALAQAVPDGIDVYFENVGGTVGDEVFKHLNRFARVPVCGAISSYN----HPEADIGPRIQGTLIKKQVMMRGFLVSEFANAFKEASEQLATWVQEGKIQSQVTIEDGFENAPHAFKNLFTGDNFGKQVIKVTE |
| 2W4Q Chain:A ((5-348)) | ---QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPP-LSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206304 for 2865 contacts (-72.0/contact) +
2D Compatibility (PS) -35609 + (NN) -13113 + (LL) 172
1D Compatibility (HY) -29200 + (ID) 6350
Total energy: -290404.0 ( -101.36 by residue)
QMean score : 0.554
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