Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------MQFLDFLIALLPALFWGSVVLINVFVGGGPYNQIRGTTLGALIVGLGLLITGFAKFNNPTVIIVGLISGALWAFGQANQLKSIS----LIGVSNTMPVSTGMQLVGTTLFSV-----IFLGEWSSMTQIIFGLIAMILLVTGVALTSLKAKNERQSD----NPEFKKAMGILIVSTV----GYVGFVVLGDIFGVGGTDALFFQSVGMAIGGFILSMNHKTSLKSTALNLLPGVIWGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGGIFILGERKDRR--------------QMTGIWAGIIIIVIAAIILGNLK |
4J72 Chain:A ((20-363)) | FAFNVLKYITFRSFTAVLIAFFLTLVLSPSFINRLKKYTPTMGGIVILIVVTLSTLL--LMRWDIKYTWVVLLSFLSFGTIGFWDDYVKLKNKKGISIKTKFLLQVLSASLISVLIYYWADIDTILYFPFFKELYVDLGVLYLPFAVFVIVGSANAVNLTDGLDGLAIGPAMTTATALGVVAYAVGHSKIAQYLNIPYVPYAGELTVFCFALVGAGLGFLWFNSFPAQMFMGDVGSLSIGASLATVALLTKSEFIFAVAAGVFVFETISVILQIIYFRWTGGKRLFKRAPFHHHLELNGLPEPKIVVRMWIISILLAIIAISMLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J72.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204586 for 2419 contacts (-84.6/contact) +
2D Compatibility (PS) -28398 + (NN) 1228 + (LL) -120
1D Compatibility (HY) -16000 + (ID) 2150
Total energy: -250026.0 ( -103.36 by residue)
QMean score : 0.237
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