Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITS--KRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSR-TTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDLI-NYLPKNKIDSADVSQKLGYNIGGNFQSAPS--IGGSGSFNYS--KTISYNQKNYVTEVESQNSKGVKWGVKANSFVTPNGQVSAYDQY-------LFAQDPTGPA-ARDYFVPDNQLPPLIQSGFNPSFITTLSHER-GKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHEVKIKSITPK |
| 3M4E Chain:A ((13-291)) | ----------------------------------DIGSNTTV--KTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSE--EGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYNSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRS-SERYKIDWEKEEM-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M4E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34490 for 1818 contacts (-19.0/contact) +
2D Compatibility (PS) -27533 + (NN) -7687 + (LL) 4316
1D Compatibility (HY) -14800 + (ID) 3750
Total energy: -83944.0 ( -46.17 by residue)
QMean score : 0.325
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