Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MKKFLFKQKFCE----SLPKSFSKTLLALSLGLILLGVFIPFPKVPKHQSV-----PLALHFTEHYARFIPTILSV-----AIPLIQRDAVGLFQVANASIATTFLTHATKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAV-AFLMRRYSVKKYLWLLPLIP------------LTMLARIYLDMHTIGAVLAGLGTGMLCVGLFTSPKNLN----------
4FF5 Chain:A ((38-266))
NIAQIEAQALKHLDKPIIDLSGWQRPEEINYDALSQNISGAIVRVHSGTTKENDASFINGIDKAYKSHITELQKRNVPVAVYAYVAGKSVQEMEKAAEVFYNAASPYSPSYYWLDVEDK-----TMSNMNEGVENFRAKLASLG--AKNIGIYVGVYFMEEHSIDTGKFTSVWIPSYGSDSGFLESSPKTDLDYDIHQYTSKGKIAGFDHD-LDINVISPLKNKEETFRKLFLKP
General information:
TITO was launched using:
RESULT:
Template:
4FF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131980 for 1357 contacts (-97.3/contact) +
2D Compatibility (PS) -19267 + (NN) -3366 + (LL) 556
1D Compatibility (HY) -1200 + (ID) 1250
Total energy: -156507.0 ( -115.33 by residue)
QMean score : 0.151
(partial model without unconserved sides chains):
PDB file :
Tito_4FF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FF5-query.scw
PDB file :
Tito_Scwrl_4FF5.pdb
: