Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVTLINNENNARYEFETIECTRGPKAVDFSKLFETTGFFSYDPGYSSTAGCQSKISYINGKKGELYYRGHRIEDLVAKYKYVDVCRLLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYSTHQNMHTEEDYQTMARRIVAKIPTLAAICYRNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVGITPLEVEAFDKILTLHADHGQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKDKNDNFKLMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYPNVDFYSGTILRALKIPVRFFTPVFVIGRTVGWCAQLLEHVKSPQARITRPRQVYVGD |
| 1IOM Chain:A ((13-365)) | ---------------------------------------------------TESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQ-ELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEK-GLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANG-------------VEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREWVREKLAKKE--RIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKE--YQILKIVEEEAGK--VLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEY-QELDNRLLRPGAKYVGE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196175 for 3048 contacts (-64.4/contact) +
2D Compatibility (PS) -37330 + (NN) -9514 + (LL) 3592
1D Compatibility (HY) -17200 + (ID) 6650
Total energy: -263277.0 ( -86.38 by residue)
QMean score : 0.498
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