Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAIN--HSSDAHLFLQDNRLLDRSLTLKDISFYRYHKASAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSYQLDYKIAINLRGNNTAFYSVSLPYIELFNKRSNNPIVIFQQSLKELMSFALK
1DAG Chain:A ((5-163))
--FVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDA-LALQRNSSLQ--LDYATVNPYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK
General information:
TITO was launched using:
RESULT:
Template:
1DAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87408 for 1214 contacts (-72.0/contact) +
2D Compatibility (PS) -16628 + (NN) -6020 + (LL) 284
1D Compatibility (HY) -7200 + (ID) 2300
Total energy: -119272.0 ( -98.25 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1DAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DAG-query.scw
PDB file :
Tito_Scwrl_1DAG.pdb
: