Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTIKNGIMIGTLGALLLSGCSSFDAQRFACLPKDHSSKDASTKKEAQYIP--KGFFDPYSSNLNHWDSTF
3NLR Chain:A ((22-78))
------------LKSTLETGCTEHICMGSIVLP-----------TKDQLFPLAKEFLDQYYSSIKRFGSKA
General information:
TITO was launched using:
RESULT:
Template:
3NLR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3115 for 162 contacts (19.2/contact) +
2D Compatibility (PS) -4302 + (NN) 2075 + (LL) 1032
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -1980.0 ( -12.22 by residue)
QMean score : -0.039
(partial model without unconserved sides chains):
PDB file :
Tito_3NLR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NLR-query.scw
PDB file :
Tito_Scwrl_3NLR.pdb
: