Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEEERQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCACEGPFHDHEKKGQKGKKPSHHKH
3NN3 Chain:A ((82-185))
----------TQQFLSAFMGTRLGRHLTSGGLLHGVSK-KPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTVKAKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKE
General information:
TITO was launched using:
RESULT:
Template:
3NN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 22449 for 504 contacts (44.5/contact) +
2D Compatibility (PS) -10255 + (NN) 4714 + (LL) 1436
1D Compatibility (HY) -3600 + (ID) 1300
Total energy: 13444.0 ( 26.67 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_3NN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NN3-query.scw
PDB file :
Tito_Scwrl_3NN3.pdb
: