Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQEKAVIRDPKKLNAFDLRWIASLFGTAVGAGILFLP---IRAGGHGIW--AIVVMSAIIFPLTYLGHRALAYFIGSKDKEDITMVVRSH-FGAQWGFLITLLYFLAIYPICLAYGVGITNVFDHFFTNQLHLAPFHRGLLAVALVSLMMLVMVFNATIVTRICNALVYPLCLILLLFSLYLIPYWQGANL---FVV-PSFKEFVLAIWLTLPVLVFSFNHSPIISTFTQNVGKEYGAFKEYKLNQIELGTSLMLLGFVMFFVFSCVMCLNADDFVKAREQNIPILSYFANTLNNPLINYAGPVVAFLAIFSSFFGHYYGAKEGLEGIIIQSLKLKQASKTLSVGVTIFLWLTITLVAYINPNILDFIENLGGPIIALILFVMPMIAFYSVSSLKRFRNFKVDIFVFVFGSLTALSVFLGLF |
| 4R1D Chain:B ((1-301)) | MDKTG---------------WITHCFGR----FLIDLPPDAVINAGYYLWGDRIEYLDDKPTELAARVDRLEQEWRTQRHKSKGNMFLRKIDFGNES---VGLLSWSSEVA-------SKTYLLDTYVTSK---PTWH-------VYRWKGKVSVDREQHAVEISRALARNLRS----RAPKEIPSEPGFCIDHAYIAGDSFQVERFGVGVTFP------EHPGARFEFRSSTGAELNSLLERVDGFVQNMLSTF------------------AGMETLRKGKHPVGSL--------------PGEEYLVAGSDKGQRGYTFMWEVQG--------KEESLTEP-------NLTAGLAVLERSN------ENGKP---------PPPAFKS-------DKEALELWDTIVDSIRVRPTS---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -277128 for 2160 contacts (-128.3/contact) +
2D Compatibility (PS) -30303 + (NN) 578 + (LL) 12656
1D Compatibility (HY) 400 + (ID) 3200
Total energy: -296997.0 ( -137.50 by residue)
QMean score : 0.074
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