Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAFLH-----FTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKG--FRAVKEFLSEQLENIDLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQ--------ILNQKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
4MKN Chain:A ((25-262))
------GNWKCNGSVANVAKLVDELNAGTIPRGVD-VVVAPPFI-YIDYVMQHLDRDKYQLSAQNAWIGGNGAFTGEVSAEQLTDFGVPWVILGHSERRSLFGESNEVVAKKTSHALAAGLGVIACIGETLEQRNSGSVFKVLDAQMDALVDEVK-DWTKVVLAYEPVWAIGTGVVASPEQAQEVHAYLRQYCAKKLGAAVADKLRIIYGGSVSDTNCKDLSKQEDIDGFLVGGASLKGAAFVTICNAA
General information:
TITO was launched using:
RESULT:
Template:
4MKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105578 for 1766 contacts (-59.8/contact) +
2D Compatibility (PS) -23945 + (NN) -9141 + (LL) 984
1D Compatibility (HY) -17600 + (ID) 3750
Total energy: -159030.0 ( -90.05 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4MKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKN-query.scw
PDB file :
Tito_Scwrl_4MKN.pdb
: