Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFASVLVQLKTLALEKIERKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQEGENLTKDLKILEKDYLLANQELEKAKIILEKEKQKEKEILEKKEQALLDENAMILHWQKGGLHA
1RKI Chain:A ((1-101))
MKKH--IIIKTIPKKEEIISRDLCDCIYYYDNS-------------VICKPIGPSKVYVSTSLENLEKCLQLHYFKK----LVKNIEIFDEVH---NSKPNCDKCLIVEIG-----------------GVYFVRRVNGVP--
General information:
TITO was launched using:
RESULT:
Template:
1RKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6368 for 709 contacts (-9.0/contact) +
2D Compatibility (PS) -10754 + (NN) 2436 + (LL) 3912
1D Compatibility (HY) -6400 + (ID) 800
Total energy: -17974.0 ( -25.35 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_1RKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RKI-query.scw
PDB file :
Tito_Scwrl_1RKI.pdb
: