Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNDFNLLI-LSGPSGAGKSTLTKYLQEKIPKTHF--SLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL
2J41 Chain:A ((4-186))
---EKGLLIVLSGPSGVGKGTVRKRIFED-PSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS---------------------------KEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAK-----------
General information:
TITO was launched using:
RESULT:
Template:
2J41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70067 for 1096 contacts (-63.9/contact) +
2D Compatibility (PS) -16947 + (NN) -8189 + (LL) 3940
1D Compatibility (HY) -14000 + (ID) 3000
Total energy: -108263.0 ( -98.78 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_2J41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J41-query.scw
PDB file :
Tito_Scwrl_2J41.pdb
: