Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQ-GYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILP-EVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAI---VEYLQQKYALKN---NACTFPKVEFHASGDVIWLERQAKEWLKL
2JFW Chain:A ((28-278))
--IGFIDSGVGGLTVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLVEQGIKMLVIACNTATAVALEEIKAALSIPVIGVILPGTRAAVKKTQNKQVGI--IGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHSSVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQN-VMGENV-----QLIDSGAETVGEVSMLLDYFNLSNSPQNGRTL--CQFYTTGSAKLFEEIAEDWLGI
General information:
TITO was launched using:
RESULT:
Template:
2JFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -230363 for 2112 contacts (-109.1/contact) +
2D Compatibility (PS) -25666 + (NN) -7257 + (LL) 464
1D Compatibility (HY) -20800 + (ID) 4400
Total energy: -288022.0 ( -136.37 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2JFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFW-query.scw
PDB file :
Tito_Scwrl_2JFW.pdb
: