Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKRAKTKAQQIKELLLKHYPNQTTELRHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLALASLEEVKEIIQSVSYSNNKSKHLISMGAKVVKDFKGVIPSTQKELMSLDGVGQKTANVVLSVCFDANYIAVDTHVFRTTHR-LGLSNANTPIKTEEELSDLFKD-----NLSKLHHALILFGRYTCKAKNPLCDACFLKEFCVSKASFKA
1KG3 Chain:A ((28-213))
------------------------------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSW
General information:
TITO was launched using:
RESULT:
Template:
1KG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89728 for 1308 contacts (-68.6/contact) +
2D Compatibility (PS) -19232 + (NN) -8866 + (LL) 2676
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -129500.0 ( -99.01 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1KG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KG3-query.scw
PDB file :
Tito_Scwrl_1KG3.pdb
: