Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKILKRPCHITLYSDSQYVCQAINVWLVNWQKKNF-----AKVKNVDLWKEFVKVSKGHSIVAVWIKGHNGHAENERCNSLAKLEAQKRVKTTT
1RBU Chain:A ((2-141))
LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADNKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDT
General information:
TITO was launched using:
RESULT:
Template:
1RBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54569 for 1072 contacts (-50.9/contact) +
2D Compatibility (PS) -14556 + (NN) -7890 + (LL) 0
1D Compatibility (HY) -8400 + (ID) 3700
Total energy: -89115.0 ( -83.13 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1RBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBU-query.scw
PDB file :
Tito_Scwrl_1RBU.pdb
: