Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREAIIKRAAKELKEGMYVNLGIGLPTLVANEVS-GMNIVFQSENGLLGIGAYPLEGGVDADLINAGKETITVVPGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGAK-KVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLAVFEFSN-NAMELVELQEGVSLDQVKEKTEAEFEVHL
1OPE Chain:B ((256-463))
VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSA---AHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSP
General information:
TITO was launched using:
RESULT:
Template:
1OPE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120838 for 1583 contacts (-76.3/contact) +
2D Compatibility (PS) -21653 + (NN) -3866 + (LL) -16
1D Compatibility (HY) -25600 + (ID) 6050
Total energy: -178023.0 ( -112.46 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1OPE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OPE-query.scw
PDB file :
Tito_Scwrl_1OPE.pdb
: