Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MNNHTSSFGSFIAKNGFLNEKEVAQKFNDYIHDRDAQIWLMIMGYDLNKIEYVKANVLSGYKADVNVIIQIKMKQTLDSENLQVKLVSNLKGFNQIDKRKLRSYQEMWNIPPNIYQLFAYFTGELKPTRQDIKYPNKRMLAYEFTNKEQQELLAWLNDNKMLIVSDILKGRGEFSAEWVLVIQKINLNMKWAL-KNINEVMQHYLDDGIVEISKKGSLKIGRITIQRKGGDNGRESANMLQFKIDPTGLLG-- |
| 2CVH Chain:A ((1-220)) | MLSTGTKSLDSLL--GGGFAPGVLTQVYGPY-ASGKTTLALQTGLLSGKKVAYVDTE--GGF--SPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKT--VDSNFALVVVD------SITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIP----------------VIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLER---HRFRPEGLMAYFRITERGIEDVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -35375 for 1782 contacts (-19.9/contact) +
2D Compatibility (PS) -22729 + (NN) -6868 + (LL) 2244
1D Compatibility (HY) -7600 + (ID) 1750
Total energy: -72078.0 ( -40.45 by residue)
QMean score : 0.173
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