Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVEIENLTKTY--GSLKALDNISLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETK-------KSVAFLSDGDFLDPKLTPLKAIAF---------------YKDFFSDFDESKALNLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQ-NASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEAAYKERLK
1OXS Chain:C ((6-238))
----VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEI
General information:
TITO was launched using:
RESULT:
Template:
1OXS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103505 for 1673 contacts (-61.9/contact) +
2D Compatibility (PS) -21781 + (NN) -2246 + (LL) 1476
1D Compatibility (HY) -14400 + (ID) 3150
Total energy: -143606.0 ( -85.84 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1OXS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXS-query.scw
PDB file :
Tito_Scwrl_1OXS.pdb
: